committing changes in /etc after apt run

Package changes:
-iproute 1:4.9.0-1 all
-libalgorithm-c3-perl 0.10-1 all
-libarchive-extract-perl 0.80-1 all
-libasprintf0c2 0.19.3-2 amd64
-libb-hooks-endofscope-perl 0.21-1 all
-libclass-c3-perl 0.32-1 all
-libclass-c3-xs-perl 0.14-1+b1 amd64
-libclass-method-modifiers-perl 2.12-1 all
-libcpan-changes-perl 0.400002-1 all
-libcpan-meta-perl 2.150010-1 all
-libdata-optlist-perl 0.110-1 all
-libdata-perl-perl 0.002009-1 all
-libdata-section-perl 0.200006-1 all
-libdevel-globaldestruction-perl 0.14-1 all
-libexporter-tiny-perl 0.042-1 all
-libfile-slurp-perl 9999.19-6 all
-libgee-0.8-2 0.18.1-1 amd64
-libgetopt-long-descriptive-perl 0.100-1 all
-libimport-into-perl 1.002005-1 all
-libio-stringy-perl 2.111-2 all
-libisocodes1 1.2.2-2 amd64
-liblist-moreutils-perl 0.416-1+b1 amd64
-liblog-message-perl 0.8-1 all
-liblog-message-simple-perl 0.10-2 all
-liblua5.1-0 5.1.5-8.1+b2 amd64
-libmodule-implementation-perl 0.09-1 all
-libmodule-load-conditional-perl 0.68-1 all
-libmodule-pluggable-perl 5.2-1 all
-libmodule-runtime-perl 0.014-2 all
-libmodule-signature-perl 0.81-1 all
-libmoo-perl 2.002005-1 all
-libmoox-handlesvia-perl 0.001008-2 all
-libmro-compat-perl 0.12-1 all
-libnamespace-autoclean-perl 0.28-1 all
-libnamespace-clean-perl 0.27-1 all
-libpackage-constants-perl 0.06-1 all
-libpackage-stash-perl 0.37-1 all
-libparams-classify-perl 0.013-6+b1 amd64
-libparams-util-perl 1.07-3+b1 amd64
-libparams-validate-perl 1.26-1 amd64
-libpath-tiny-perl 0.100-1 all
-libperl4-corelibs-perl 0.003-2 all
-libpod-readme-perl 1.1.2-1 all
-libpython2.7 2.7.13-2 amd64
-libregexp-common-perl 2016060801-1 all
-librole-tiny-perl 2.000005-1 all
-libsoftware-license-perl 0.103012-1 all
-libstrictures-perl 2.000003-1 all
-libsub-exporter-perl 0.986-1 all
-libsub-exporter-progressive-perl 0.001013-1 all
-libsub-identify-perl 0.12-2+b1 amd64
-libsub-install-perl 0.928-1 all
-libsub-name-perl 0.21-1 amd64
-libterm-ui-perl 0.46-1 all
-libtext-soundex-perl 3.4-1+b4 amd64
-libtext-template-perl 1.46-1 all
-libtry-tiny-perl 0.28-1 all
-libtype-tiny-perl 1.000005-1 all
-libvariable-magic-perl 0.61-1 amd64
-python-ecdsa 0.13-2 all
-python-ndg-httpsclient 0.4.2-1 all
-python3-crypto 2.6.1-7 amd64
-python3-ecdsa 0.13-2 all
-timelimit 1.8.1-2 amd64

diff --git a/php5/apache2/conf.d/20-mysql.ini b/php5/apache2/conf.d/20-mysql.ini
deleted file mode 120000 (symlink)
index 272d53b..0000000
--- a/php5/apache2/conf.d/20-mysql.ini
+++ /dev/null
@@ -1 +0,0 @@
-../../mods-available/mysql.ini
\ No newline at end of file

diff --git a/php5/apache2/conf.d/20-mysqli.ini b/php5/apache2/conf.d/20-mysqli.ini
deleted file mode 120000 (symlink)
index 00f1c92..0000000
--- a/php5/apache2/conf.d/20-mysqli.ini
+++ /dev/null
@@ -1 +0,0 @@
-../../mods-available/mysqli.ini
\ No newline at end of file

diff --git a/php5/apache2/conf.d/20-pdo_mysql.ini b/php5/apache2/conf.d/20-pdo_mysql.ini
deleted file mode 120000 (symlink)
index 576055f..0000000
--- a/php5/apache2/conf.d/20-pdo_mysql.ini
+++ /dev/null
@@ -1 +0,0 @@
-../../mods-available/pdo_mysql.ini
\ No newline at end of file

diff --git a/php5/cli/conf.d/20-mysql.ini b/php5/cli/conf.d/20-mysql.ini
deleted file mode 120000 (symlink)
index 272d53b..0000000
--- a/php5/cli/conf.d/20-mysql.ini
+++ /dev/null
@@ -1 +0,0 @@
-../../mods-available/mysql.ini
\ No newline at end of file

diff --git a/php5/cli/conf.d/20-mysqli.ini b/php5/cli/conf.d/20-mysqli.ini
deleted file mode 120000 (symlink)
index 00f1c92..0000000
--- a/php5/cli/conf.d/20-mysqli.ini
+++ /dev/null
@@ -1 +0,0 @@
-../../mods-available/mysqli.ini
\ No newline at end of file

diff --git a/php5/cli/conf.d/20-pdo_mysql.ini b/php5/cli/conf.d/20-pdo_mysql.ini
deleted file mode 120000 (symlink)
index 576055f..0000000
--- a/php5/cli/conf.d/20-pdo_mysql.ini
+++ /dev/null
@@ -1 +0,0 @@
-../../mods-available/pdo_mysql.ini
\ No newline at end of file